PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G167500.1
Common NameB456_012G167500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 146aa    MW: 16885.5 Da    PI: 9.9672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G167500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-12892185
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                        f+k lt+ dv k+  l++p +   ++     gk+    + +++d++g++W+++++ rkk+    vlt+GW  Fv+  +L +gD v  + +
  Gorai.012G167500.1  8 FKKRLTKTDVEKR--LSIPSRKK-KCflnfRGKH--MAEFKVKDKHGKEWKFNCSTRKKDYPkPVLTSGWLLFVQWWNLAVGDEVKVYGK 92
                        7888988888876..9***9985.5568775554..34899*************7655544369*******************9888744 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-17390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.12E-13790No hitNo description
SuperFamilySSF1019366.15E-13788IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-9891IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAIEKELFKK RLTKTDVEKR LSIPSRKKKC FLNFRGKHMA EFKVKDKHGK EWKFNCSTRK  60
KDYPKPVLTS GWLLFVQWWN LAVGDEVKVY GKMDQAGEEH YRIEVAVATD STADGTVNDD  120
QTETHFFEFI SLKPDLNVGK SKLIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1828KKRLTKTDVEKRLSIPSRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430831e-179AC243083.1 Gossypioides kirkii clone GKH003A06-jng, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612803.14e-40PREDICTED: uncharacterized protein LOC108458073
RefseqXP_017612804.14e-40PREDICTED: uncharacterized protein LOC108458073
TrEMBLA0A0D2VZ851e-103A0A0D2VZ85_GOSRA; Uncharacterized protein
STRINGGorai.012G167500.11e-104(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2231223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-07auxin response factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]