PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G168700.1

Common Name

B456_012G168700, LOC105779372

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Protein Properties

Length: 277aa MW: 29724.9 Da PI: 5.903

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G168700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.1	5.5e-12	9	98	1	90
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEE.ETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltle.desgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l++ d + +rl++p k + + g ++ ++++ + + W +++++rk++ + vl+ GW++Fv +n+Lk+gD+++ + d + Gorai.012G168700.1 9 FSKKLKTTDIN--KRLTIPGKILPSLpafnG----GH-AVMIQlNYGTKIWPIYCTVRKNGYKkPVLSVGWRKFVADNKLKTGDIITMYKDFE 94 66777555554..469999999988865432....22.3444404566*****996555555*********************996533 PP .SEE CS B3 88 .sef 90 +++ Gorai.012G168700.1 95 dEDG 98 3554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.8E-14	3	115	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-13	4	104	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.939	7	110	IPR003340	B3 DNA binding domain
CDD	cd10017	2.45E-16	7	108	No hit	No description
SMART	SM01019	3.7E-4	9	105	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-9	10	98	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MASQPTKMFS KKLKTTDINK RLTIPGKILP SLPAFNGGHA VMIQLNYGTK IWPIYCTVRK 60 NGYKKPVLSV GWRKFVADNK LKTGDIITMY KDFEDEDGGS HFRVEVEKPP AASKQDRSHG 120 TLPSSSVLAF NDHEVDGTNS GNEADRIPNK ALDDGAINLE GGIPIMELPD VATDTLVDGH 180 VIAKPSVTIF GAIMTDEMKC LGITKGTDMA EPSFLSPCMA KPEREIDFLG IAEGGDAIAY 240 GSGPSDAAGE ACCNFITHHR SVTLDLVLSQ PNPYAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616349	0.0	JX616349.1 Gossypium hirsutum clone NBRI_GE60935 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012458573.1	0.0	PREDICTED: uncharacterized protein LOC105779372
TrEMBL	A0A0D2S482	0.0	A0A0D2S482_GOSRA; Uncharacterized protein
STRING	Gorai.012G168700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20789	3	6

Link Out ? help Back to Top
Phytozome	Gorai.012G168700.1
Entrez Gene	105779372

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]