PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G168900.1
Common NameB456_012G168900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 243aa    MW: 27094.1 Da    PI: 7.0784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G168900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-14996189
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88
                        ffk+lt  dv k  rlv+pk++ + +    g   + + +++l+  +g+ Wevk+++rkk+    vl+ GWk+Fv an+Lk+gD ++ + d++ 
  Gorai.012G168900.1  9 FFKELTDTDVKK--RLVVPKEYQDFFlpsyG---RLPAKIKLMY-DGKIWEVKCTVRKKGYLkPVLSVGWKKFVVANELKVGDRITMYKDEDG 95
                        899997777776..59*****9876697543...4677899887.9********77544433699*********************9944433 PP

                        E CS
                  B3 89 e 89
                         
  Gorai.012G168900.1 96 F 96
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-177101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.3217107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-188101IPR015300DNA-binding pseudobarrel domain
CDDcd100176.12E-238105No hitNo description
SMARTSM010196.8E-109104IPR003340B3 DNA binding domain
PfamPF023625.7E-11995IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAAHSGIIFF KELTDTDVKK RLVVPKEYQD FFLPSYGRLP AKIKLMYDGK IWEVKCTVRK  60
KGYLKPVLSV GWKKFVVANE LKVGDRITMY KDEDGFSHYM VEVEKPPASN QHDTLPDSPA  120
LSFIHHKPDE TTLKYRKEVP EDLAGAHHQP DIAPMNIPVN AWQRPSIGMF GTNVSNERAD  180
HFSLMTYGSG TSAAGGIGEA CPEIITDHHQ DLSLDLVRRQ PGTIPPPYVG EVKLDLTLAP  240
PN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679336.11e-176PREDICTED: uncharacterized protein LOC107898334
TrEMBLA0A0D2V7D31e-180A0A0D2V7D3_GOSRA; Uncharacterized protein
STRINGGorai.012G168900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1975325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.12e-06DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]