PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G183200.1

Common Name

B456_012G183200, LOC105779801

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

BBR-BPC

Protein Properties

Length: 254aa MW: 28189.2 Da PI: 10.4234

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G183200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	289.9	1.1e-88	1	253	32	301
GAGA_bind 32 iaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksid 109 + erdak r++nl + +++ a++++d m++ rd+++a+ ++k++++ ++++ +++ v ++t+ + Gorai.012G183200.1 1 MVERDAKSfipsRDSNL-MVTTNTAFHQQDpvvseahtpMNY-VRDSWIAD--------REKIFSMFPATT-------PNYAVHPETSAAY 74 56999999999999999.999*******9*******.9***........789999999665.......5788999999999 PP GAGA_bind 110 slqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvln 199 sl l+ +++ +r+e+ + e+++ +k+ ++kkrq ++ pk +kakk+kk +k++ ++ +r+k+ kksi + +n Gorai.012G183200.1 75 SLPI-----LRSPPYSsTRDERVA--SSV-EEPPANKDGVEPKKRQGGAAPKMPKAKKPKK----PKENANSTV--QRVKSAKKSIVFKIN 151 8888.....888888834444433..333.46777777788888999*******999....333344444..789******** PP GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 g ++D+s++P+PvCsCtG+ +qCY+WG GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae y++snp+DL++hWA Gorai.012G183200.1 152 GYDMDISGIPIPVCSCTGTAQQCYRWGFGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAENYNFSNPIDLRSHWA 242 *************************************************************************************** PP GAGA_bind 291 kHGtnkfvtir 301 +HGtnkfvtir Gorai.012G183200.1 243 RHGTNKFVTIR 253 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	4.2E-96	1	253	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	4.7E-124	1	253	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVERDAKSFI PSRDSNLMVT TNTAFHQQDP VVSEAHTPMN YVRDSWIADR EKIFSMFPAT 60 TPNYAVHPET SAAYSLPILR SPPYSSTRDE RVASSVEEPP ANKDGVEPKK RQGGAAPKMP 120 KAKKPKKPKE NANSTVQRVK SAKKSIVFKI NGYDMDISGI PIPVCSCTGT AQQCYRWGFG 180 GWQSACCTTN VSMYPLPMST KRRGARIAGR KMSQGAFKKV LEKLAAENYN FSNPIDLRSH 240 WARHGTNKFV TIR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2859	0.0	flower\|seedling\| flowering

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48806794	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269\|PubMed:15722463}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:21435046}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459186.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE1-like
Refseq	XP_012459187.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE1-like
Swissprot	Q9SKD0	4e-91	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A0D2S501	0.0	A0A0D2S501_GOSRA; Uncharacterized protein
STRING	Gorai.012G183200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	8e-85	basic pentacysteine 2

Link Out ? help Back to Top
Phytozome	Gorai.012G183200.1
Entrez Gene	105779801

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]