PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.012G186900.2

Common Name

B456_012G186900, LOC105780776

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 231aa MW: 26006.2 Da PI: 10.013

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.012G186900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	9e-39	47	107	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s+ tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk k+ss Gorai.012G186900.2 47 PDKMLPCPRCNSKATKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKTKASS 107 7899*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	38	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-31	49	105	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MENGFHKDKH EKTRSEDIKD DSEASSLRSS KNGETTCSQQ DKTMKKPDKM LPCPRCNSKA 60 TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKTKASSSLH FNHQWFPSKV 120 ACFSRPFPWD VPMASYNIPV SPTVLGKHSR DEPNMDSTTL RIIDDDGETN KSSLLATPIM 180 KTKNTNSGGL FNGLQAKGND ERNYRSVETF SVLRANPAAL SRSLNFHEKT *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012460726.1	1e-174	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0D2TRS9	1e-173	A0A0D2TRS9_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2V845	1e-173	A0A0D2V845_GOSRA; Uncharacterized protein
STRING	Gorai.012G186900.1	1e-174	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	4e-48	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Gorai.012G186900.2
Entrez Gene	105780776

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]