PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G016900.1
Common NameB456_013G016900, LOC105782705
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 173aa    MW: 19291.9 Da    PI: 6.9912
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G016900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.57.2e-4111109199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+l+r+C+++C++apyf + +pkkfanvhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ ql+
  Gorai.013G016900.1  11 SCAACKLLKRRCSPNCIFAPYFRSGEPKKFANVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIQLQ 101
                         6****************************************************************************************** PP

              DUF260  92 aelallke 99 
                         ++lal+++
  Gorai.013G016900.1 102 HDLALARA 109
                         ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.40710111IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSGEPKKF ANVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV  120
IVSSDDHHRV ITGPFDDFPV DCGVSFDSFN QNISYELNQE ANMYDFSQIP YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4661146114LOB family transfactor Ramosa2.1
5ly0_B6e-4661146114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463079.11e-127PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL82e-64LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0D2V7P11e-125A0A0D2V7P1_GOSRA; Uncharacterized protein
STRINGGorai.013G016900.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.18e-67LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]