PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G021200.1

Common Name

B456_013G021200, LOC105784056

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 369aa MW: 40204.3 Da PI: 5.509

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G021200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	129.9	9.8e-41	145	241	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lfqrl+se+Dei+lL G++d+ ak+g++p +d+++fyefvkksi+ +vsk ql++KirrLKkKfk++ k ++g++p+fsk+h+q++fels Gorai.013G021200.1 145 LFQRLFSEDDEIALLIGMLDYSAKKGADPCADMNEFYEFVKKSIHTDVSKVQLMDKIRRLKKKFKNNAGKNSKGEDPTFSKPHEQNAFELS 235 69*************************************************************************************** PP DUF573 93 kkiWgs 98 k+iWg+ Gorai.013G021200.1 236 KQIWGK 241 **95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.9E-35	146	240	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MAPKRSNPIE VPPAASSSEE DEEVTSSEEV DEGSSTEEDP KTQSTPMSQK SPPPRKLETA 60 TPAIVKEGSD ESGSDSESDT AAQIAIATEP RCNKSLASSS KRPGKSELDA KEAKRLKKKV 120 GEEGMATAPV VEGVKKTGED AKKLLFQRLF SEDDEIALLI GMLDYSAKKG ADPCADMNEF 180 YEFVKKSIHT DVSKVQLMDK IRRLKKKFKN NAGKNSKGED PTFSKPHEQN AFELSKQIWG 240 KEGISGKVES STAKSNGKAK GKNKAEVAVK AELLSSSDKK IDDAVPVEVD EVVSKSSSNF 300 LDKKFSLSDL EEAVVKVGLD MVDGEKKAAL EAKWMKLQVA QLEAYARRTE FVAEQAKLLL 360 KYYKSEDK*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MAPKRSNPIE VPPAASSSEE DEEVTSSEEV DEGSSTEEDP KTQSTPMSQK SPPPRKLETA  60
TPAIVKEGSD ESGSDSESDT AAQIAIATEP RCNKSLASSS KRPGKSELDA KEAKRLKKKV  120
GEEGMATAPV VEGVKKTGED AKKLLFQRLF SEDDEIALLI GMLDYSAKKG ADPCADMNEF  180
YEFVKKSIHT DVSKVQLMDK IRRLKKKFKN NAGKNSKGED PTFSKPHEQN AFELSKQIWG  240
KEGISGKVES STAKSNGKAK GKNKAEVAVK AELLSSSDKK IDDAVPVEVD EVVSKSSSNF  300
LDKKFSLSDL EEAVVKVGLD MVDGEKKAAL EAKWMKLQVA QLEAYARRTE FVAEQAKLLL  360
KYYKSEDK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ751265	0.0	JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465288.1	0.0	PREDICTED: mediator-associated protein 1-like isoform X1
TrEMBL	A0A0D2W202	0.0	A0A0D2W202_GOSRA; Uncharacterized protein
STRING	Gorai.013G021200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.013G021200.1
Entrez Gene	105784056

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]