PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G022000.1
Common NameB456_013G022000, LOC105782009
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 229aa    MW: 25607.2 Da    PI: 9.5158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G022000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135476123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Gorai.013G022000.1 54 YTCSFCWREFKSAQALGGHMNVH 76
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-65180No hitNo description
SMARTSM003550.00855476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9075481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEEAQYLMLM KRRQFLKSHF QVSINSLSET WEEKAFAEDA AGSLGGCIWP PRSYTCSFCW  60
REFKSAQALG GHMNVHRRDR AKLKQSLSPK NEVVSNQNQN PNPLKPSDPK SPHPAADLAH  120
SFSSSRVSAS SKNFGTCSFV QGQHQGLLSS YDDGVINCKR RKIAASTTLP FLVPKEKCYS  180
SLQWQVLGVK PAVAGSMEEL DLELRLGAQP KVKSWNMDQR DCKRMELL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-124976229superman protein
2l1o_A3e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRDRAKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461970.11e-171PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0D2V8441e-170A0A0D2V844_GOSRA; Uncharacterized protein
STRINGGorai.013G022000.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-29C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]