PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G023000.2

Common Name

B456_013G023000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 240aa MW: 27556 Da PI: 9.1719

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G023000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9e-06	142	181	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq Gorai.013G023000.2 142 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 181 7999************99.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.734	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-11	142	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-4	142	185	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-8	146	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MPYLDVLMQM ESKGNVNGDA FSMEPKIFYN DNQIRDGAFA IPYQSHFNSN FLQDYEYGSS 60 NFDNNFQQSM SLSSKLAIPY LESESIQNGR KREIGFNNDP NTALDERNKN KRKKLLTSFE 120 QSHRSSQERT EIKDFRLNMP VRRSQKLSDK ITALQKLVSP YGKTDTASVL QEASLYIKLL 180 QEQIQMLSSS YKSLRAIHPQ EIGKKQEDLK SRGLCLVPIS FTQRVTKEEQ SSLENLNNM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461279.1	1e-175	PREDICTED: uncharacterized protein LOC105781290
TrEMBL	A0A0D2S6U1	1e-175	A0A0D2S6U1_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2V854	1e-175	A0A0D2V854_GOSRA; Uncharacterized protein
STRING	Gorai.013G023000.1	1e-176	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	3e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G023000.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]