PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G023300.1

Common Name

B456_013G023300, LOC105781092

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 164aa MW: 18346.9 Da PI: 8.1573

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G023300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Gorai.013G023300.1 42 FECKTCNRQFNSFQALGGHRASH 64 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.87E-9	40	111	No hit	No description
Pfam	PF13912	7.9E-13	41	66	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.21	42	64	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2
Pfam	PF13912	6.2E-10	88	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.5	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.452	89	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MKRSFLNREE NNLALANCLM LLSQGGHQYE HPEIDSNPSR VFECKTCNRQ FNSFQALGGH 60 RASHKKPRLV EVDSEMSENQ ASPAKPKTHE CSICGLEFAI GQALGGHMRR HRGVLSENQH 120 EEPIVKKSNS RRVLCLDLNL TPLENDLELF KLGKGAPTIN FLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461124.1	1e-117	PREDICTED: zinc finger protein ZAT11-like
TrEMBL	A0A0D2W244	1e-116	A0A0D2W244_GOSRA; Uncharacterized protein
STRING	Gorai.013G023300.1	1e-117	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	7e-36	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G023300.1
Entrez Gene	105781092

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]