PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G038100.1

Common Name

B456_013G038100, LOC105784034

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 362aa MW: 40503.3 Da PI: 5.5158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G038100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.5e-12	189	242	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ hn+ Er RR ++ a+ L llP++s +++k+ s a i +AveYI +L Gorai.013G038100.1 189 KKQEHNAKERIRRMKLHAAYLALGALLPSDSTGSKKRKSTALIIDRAVEYIPEL 242 6899***********************85555555************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-12	184	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.443	188	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	188	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-9	189	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-6	194	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSSLHLENLF SIPEATDEYL WPLTQDNKDD GKNFSASIQT DGHQCSSSSS QAVMDNVNGN 60 KLDPVLALDQ GIPALLSDYT IEDNARTGDQ LGTTSKFILE SVDHNIVGES MESILDYPID 120 VSLSAPLEDL DDIDLVPHES SSRQLPSTYQ ETGDAHINAK RISSKTRGRN HRFKQGLNME 180 DNGEGTTMKK QEHNAKERIR RMKLHAAYLA LGALLPSDST GSKKRKSTAL IIDRAVEYIP 240 ELEKEIEKLT LRKNDMLSTI KNKKSCAVLN HFQLRQPSVS VHEIKQGEFI VQICTQEYPD 300 CSFLNLLHNV EEEEGICIIS ASTHQVSDHG HCYHLHIQMH ERLDGENHIA SLREKLMYSQ 360 G*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSSLHLENLF SIPEATDEYL WPLTQDNKDD GKNFSASIQT DGHQCSSSSS QAVMDNVNGN  60
KLDPVLALDQ GIPALLSDYT IEDNARTGDQ LGTTSKFILE SVDHNIVGES MESILDYPID  120
VSLSAPLEDL DDIDLVPHES SSRQLPSTYQ ETGDAHINAK RISSKTRGRN HRFKQGLNME  180
DNGEGTTMKK QEHNAKERIR RMKLHAAYLA LGALLPSDST GSKKRKSTAL IIDRAVEYIP  240
ELEKEIEKLT LRKNDMLSTI KNKKSCAVLN HFQLRQPSVS VHEIKQGEFI VQICTQEYPD  300
CSFLNLLHNV EEEEGICIIS ASTHQVSDHG HCYHLHIQMH ERLDGENHIA SLREKLMYSQ  360
G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX614544	1e-155	JX614544.1 Gossypium hirsutum clone NBRI_GE58013 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465250.1	0.0	PREDICTED: transcription factor ORG2 isoform X1
TrEMBL	A0A0D2V9W8	0.0	A0A0D2V9W8_GOSRA; Uncharacterized protein
STRING	Gorai.013G038100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	3e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G038100.1
Entrez Gene	105784034

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]