PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G043700.1
Common NameB456_013G043700, LOC105782772
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 286aa    MW: 31643.4 Da    PI: 6.0468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G043700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20132181255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+  ++g
  Gorai.013G043700.1 132 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 181
                         59*******.**********82....48**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-34131189No hitNo description
PROSITE profilePS5103225.211132189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-33132189IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22132190IPR016177DNA-binding domain
PfamPF008473.0E-14132181IPR001471AP2/ERF domain
SMARTSM003806.8E-37132195IPR001471AP2/ERF domain
PRINTSPR003674.0E-12133144IPR001471AP2/ERF domain
PRINTSPR003674.0E-12155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQKPMKRQRL TPVPPPSVHR LSPEHETSIM VAALKNVVAG YTPTSTSAVS VSAVDIPSDF  60
VPLVTSTVST AGISRDFDDA LFEANEVMDK CHVCRFDGCL GCNLFPPSHQ EDQTVTTTAT  120
TMFSKPKRVK KNYRGVRQRP WGKWAAEIRD PRRAARVWLG TFNTAEEAAR AYDKAAIDFR  180
GPRAKLNFPF PDRTHSDGDV TTSAAAAATT TSVVVFDQEN SGAFNLNIGK ESEMRIGSEF  240
WDGMGEDEIQ EWMKMMTTDF DWDNNNNNNK YFSDSAMTMG NASSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23131190161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463199.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A0D2S8800.0A0A0D2S880_GOSRA; Uncharacterized protein
STRINGGorai.013G043700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-37redox responsive transcription factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]