PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G048000.1

Common Name

B456_013G048000, LOC105784341

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 249aa MW: 26519.5 Da PI: 6.7755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G048000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00013	141	180	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i ++++ L++l+ + +K + a++L +A+ YI+ L Gorai.013G048000.1 141 KVRKEKIGDRINALQQLVSPF-----GKTDTASVLHEAMGYIRFL 180 568899***********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.59E-5	122	185	No hit	No description
PROSITE profile	PS50888	10.791	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-11	140	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-8	141	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMAETEADHG FEGDQETATT TTTSSSFSQL LFGGGHDDDG DTLGPAQSFN YTCSSFAVKS 60 TPKMLCFGGC HPNDADIVLG KPAINAAPKA GLTCSDSSST SSGNNTKSMQ CRGAIVEAQP 120 TRRRTNKRSK VENPTTGGHA KVRKEKIGDR INALQQLVSP FGKTDTASVL HEAMGYIRFL 180 HDQVQVLCSP YLQHPHDGEN NGGEESRKEL KSRGLCLVPV ACTAHVENSN GADFWSPATM 240 GNNVIIRQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	RRTNKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465652.1	0.0	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q9LT67	1e-53	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0D2VAP9	0.0	A0A0D2VAP9_GOSRA; Uncharacterized protein
STRING	Gorai.013G048000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	8e-53	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G048000.1
Entrez Gene	105784341

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]