PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G061100.1

Common Name

B456_013G061100, LOC105782485

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 1068aa MW: 119815 Da PI: 6.0426

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G061100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	183.1	3.1e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l+ ++rwl++ ei++iL n++k+++t+e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+ l+cyYah+een+ Gorai.013G061100.1 20 LEAQHRWLRPAEICEILCNYQKFHITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDKLHCYYAHGEENE 110 5679************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Le +l +iv+vhylevk Gorai.013G061100.1 111 NFQRRSYWMLEPDLMHIVFVHYLEVK 136 *********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	86.265	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.3E-84	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.7E-51	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.9E-6	479	580	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.0E-6	494	573	IPR002909	IPT domain
SuperFamily	SSF81296	1.15E-16	494	580	IPR014756	Immunoglobulin E-set
Pfam	PF12796	2.4E-6	675	751	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.39E-13	676	785	No hit	No description
PROSITE profile	PS50297	18.351	676	787	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.4E-17	679	790	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.42E-16	679	787	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.885	726	758	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.67E-7	886	937	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.5	886	908	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.858	887	916	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0016	888	907	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	909	931	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.395	910	934	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.7E-4	912	931	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILCNYQ KFHITSEPPT RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDKLH CYYAHGEENE NFQRRSYWML 120 EPDLMHIVFV HYLEVKGSRT IGGIRENSDL SNSQTSSLLT SSNSVTHTKE PSAHANSACS 180 ITSLTSLYED ADSEDSCQAS SRVRTSPQIG NATVMDKLDP GFLNHYSPHP IQGQSSIPGV 240 TEVSHLHGDR TGDTNYGSCI SEAQRTLGLT SWEQGLEPYV PVYADAFSNA SLTSTQPDTI 300 SISLQQETMM KGKLLAVESA GGEFGNPLPT QPHWQTPLAD NALELPKWSM DPSSNFDLPF 360 DSKLFEQNAH EFQNTLEEFS GHGVFNDQPL HKNLQMQIMN ADSHSVMRTY PDNDMHLDGN 420 VNYALSLKKS LLDGEESLKK VDSFSRWVTK ELGEVDNLQM QSSSGIAWST VECGNVSDDA 480 SLSPSLSHDQ LFSIVDFSPK WAYIDLETEV LIIGTYLRSQ EQVAKYNWSC MFGEVEVSAE 540 VIADGILSCY APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFTKDINIL DIYDIASREM 600 LMRFERLLSL KSSNYPNHHS EGVREKRDLI TKIISMREEE ECHRIVDPSS DKDVSQHKEK 660 DCLLQKLMKE KLYSWLLHKI MEDGKGPNVL DEKGQGVLHL AAALGYDWAI KPTVTAGVSI 720 NFRDANGWTA LHWAAFCGRE QTVAILVSLG AAAGAVTDPT PEFPLGRPPA DLASGNGHKG 780 ISGFLAESSL TSFLSNLTMN DQKEAVQTVS DRIATPVFDS DDILSLKDSL TAVCNATQAA 840 DRIHQMFRMQ SFQRKQLSES GDGVSDEHAI SLLTAKARRP LHIDGVAHAA ATQIQKKYRG 900 WKKRKEFLLI RQRIVKIQAH VRGHQVRKQY RTIVWSVGIL EKVILRWRRK GSGLRGFRRD 960 AITKEPDPQC TPSKEDDYDF LKEGRKQTEE RLQKALTRVK SMAQNPEGRG QYRRLLTLVQ 1020 GIRENKACDM VLSSTEEAGE GEGDGDEDFI DIETLLDDEN FMSIAFE*

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILCNYQ KFHITSEPPT RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDKLH CYYAHGEENE NFQRRSYWML  120
EPDLMHIVFV HYLEVKGSRT IGGIRENSDL SNSQTSSLLT SSNSVTHTKE PSAHANSACS  180
ITSLTSLYED ADSEDSCQAS SRVRTSPQIG NATVMDKLDP GFLNHYSPHP IQGQSSIPGV  240
TEVSHLHGDR TGDTNYGSCI SEAQRTLGLT SWEQGLEPYV PVYADAFSNA SLTSTQPDTI  300
SISLQQETMM KGKLLAVESA GGEFGNPLPT QPHWQTPLAD NALELPKWSM DPSSNFDLPF  360
DSKLFEQNAH EFQNTLEEFS GHGVFNDQPL HKNLQMQIMN ADSHSVMRTY PDNDMHLDGN  420
VNYALSLKKS LLDGEESLKK VDSFSRWVTK ELGEVDNLQM QSSSGIAWST VECGNVSDDA  480
SLSPSLSHDQ LFSIVDFSPK WAYIDLETEV LIIGTYLRSQ EQVAKYNWSC MFGEVEVSAE  540
VIADGILSCY APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFTKDINIL DIYDIASREM  600
LMRFERLLSL KSSNYPNHHS EGVREKRDLI TKIISMREEE ECHRIVDPSS DKDVSQHKEK  660
DCLLQKLMKE KLYSWLLHKI MEDGKGPNVL DEKGQGVLHL AAALGYDWAI KPTVTAGVSI  720
NFRDANGWTA LHWAAFCGRE QTVAILVSLG AAAGAVTDPT PEFPLGRPPA DLASGNGHKG  780
ISGFLAESSL TSFLSNLTMN DQKEAVQTVS DRIATPVFDS DDILSLKDSL TAVCNATQAA  840
DRIHQMFRMQ SFQRKQLSES GDGVSDEHAI SLLTAKARRP LHIDGVAHAA ATQIQKKYRG  900
WKKRKEFLLI RQRIVKIQAH VRGHQVRKQY RTIVWSVGIL EKVILRWRRK GSGLRGFRRD  960
AITKEPDPQC TPSKEDDYDF LKEGRKQTEE RLQKALTRVK SMAQNPEGRG QYRRLLTLVQ  1020
GIRENKACDM VLSSTEEAGE GEGDGDEDFI DIETLLDDEN FMSIAFE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462697.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X3
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0D2S9A0	0.0	A0A0D2S9A0_GOSRA; Uncharacterized protein
STRING	Gorai.013G061100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4082	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Gorai.013G061100.1
Entrez Gene	105782485

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]