PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G063500.1
Common NameB456_013G063500, LOC105781181
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 203aa    MW: 23198.7 Da    PI: 5.6206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G063500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.85.2e-37101331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         +ppGfrFhPtdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+ +e k+wy++s+r++        nr t++gyWka g +++
  Gorai.013G063500.1  10 VPPGFRFHPTDEELVVHFLQRKAALLPCHP-DVIPDLHLYPYDPWELDGKALGEGKQWYYYSRRSE--------NRNTRNGYWKAMGMEES 91 
                         69*************************999.99**************977778899******9865........788999*********** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                         v+++ +++ vg+kk Lvf+ g+a++g     ktdW+mheyrl
  Gorai.013G063500.1  92 VVNRsSSRRVGIKKYLVFFIGEAEEGGgggvKTDWIMHEYRL 133
                         *99867788**********998888644444*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-458166IPR003441NAC domain
PROSITE profilePS5100545.54110168IPR003441NAC domain
PfamPF023655.7E-2411133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGDNNSINKV PPGFRFHPTD EELVVHFLQR KAALLPCHPD VIPDLHLYPY DPWELDGKAL  60
GEGKQWYYYS RRSENRNTRN GYWKAMGMEE SVVNRSSSRR VGIKKYLVFF IGEAEEGGGG  120
GVKTDWIMHE YRLSDSDSSS GTSRSSKRRG HNSKIDYSKW VICRVYERRC STSDEEDGGM  180
ELSCLDEVFL SLDDDDEISN CH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-381017317170NO APICAL MERISTEM PROTEIN
1ut4_B1e-381017317170NO APICAL MERISTEM PROTEIN
1ut7_A1e-381017317170NO APICAL MERISTEM PROTEIN
1ut7_B1e-381017317170NO APICAL MERISTEM PROTEIN
3swm_A1e-381017320173NAC domain-containing protein 19
3swm_B1e-381017320173NAC domain-containing protein 19
3swm_C1e-381017320173NAC domain-containing protein 19
3swm_D1e-381017320173NAC domain-containing protein 19
3swp_A1e-381017320173NAC domain-containing protein 19
3swp_B1e-381017320173NAC domain-containing protein 19
3swp_C1e-381017320173NAC domain-containing protein 19
3swp_D1e-381017320173NAC domain-containing protein 19
4dul_A1e-381017317170NAC domain-containing protein 19
4dul_B1e-381017317170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461186.11e-150PREDICTED: NAC domain-containing protein 68-like
SwissprotQ8GWK62e-78NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D2TW441e-148A0A0D2TW44_GOSRA; Uncharacterized protein
STRINGGorai.013G063500.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-71xylem NAC domain 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]