PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G073000.1
Common NameB456_013G073000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 212aa    MW: 24195.7 Da    PI: 5.1861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G073000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-13350148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEd++l  +v+++G  +W+  ++  g++R++k+c+ rw +yl
  Gorai.013G073000.1  3 KGEWSAEEDDKLRTYVQKYGHWNWHQLPKFAGLKRCGKSCRWRWMNYL 50
                        799*****************99************************97 PP
2Myb_DNA-binding57.43.3e-185699146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        rg++T+eEd l++++++q+G++ W+tIa+ +  gRt+ ++k++w++
  Gorai.013G073000.1 56 RGNFTEEEDALIIKLHEQFGNR-WSTIAKSLR-GRTDSEIKNHWHS 99
                        89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.175150IPR017930Myb domain
SMARTSM007176.8E-10252IPR001005SANT/Myb domain
SuperFamilySSF466895.75E-29297IPR009057Homeodomain-like
PfamPF002494.4E-12350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-21457IPR009057Homeodomain-like
CDDcd001677.79E-8550No hitNo description
PROSITE profilePS5129425.73251105IPR017930Myb domain
SMARTSM007171.6E-1655103IPR001005SANT/Myb domain
PfamPF002498.8E-1656100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2558104IPR009057Homeodomain-like
CDDcd001679.17E-115898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKKGEWSAEE DDKLRTYVQK YGHWNWHQLP KFAGLKRCGK SCRWRWMNYL LPGLKRGNFT  60
EEEDALIIKL HEQFGNRWST IAKSLRGRTD SEIKNHWHSQ LKKSTKGDEE EKCSSWQSEA  120
TQNENICEGE AESNSIDNMT LGSSPPSSPS PSSSSGSMSS LNAVGRLEDT RLPYLEIYET  180
ESSGDFWSQP FVTDNTSSLE KGGFELPLPY DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-25110525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461356.11e-156PREDICTED: transcription factor WER-like
TrEMBLA0A0D2VBW21e-155A0A0D2VBW2_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.013G073000.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3716622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.13e-45myb domain protein 63
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]