PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G076100.1
Common NameB456_013G076100, LOC105783660
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 343aa    MW: 37522.7 Da    PI: 4.5799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G076100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17125171454
                 AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          GVr++k +g+W+AeIr+p e   ++r++lg+++t e+Aa+a++a ++++e
  Gorai.013G076100.1 125 VGVRRRK-WGKWAAEIRHPLE---KTRIWLGTYDTLEDAARAYDAKKLEFE 171
                         7***998.**********965...5*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-15123177IPR001471AP2/ERF domain
PROSITE profilePS5103218.716123180IPR001471AP2/ERF domain
PRINTSPR003671.6E-7124135IPR001471AP2/ERF domain
PfamPF008476.2E-12124172IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-16125170IPR016177DNA-binding domain
CDDcd000185.56E-22125170No hitNo description
Gene3DG3DSA:3.30.730.105.3E-21126170IPR001471AP2/ERF domain
PRINTSPR003671.6E-7146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPEPRKEASN KNKLYKKSKK TQPILSEEDT QMTRKVRVIF HDPYATDSSS SEDESERTIT  60
RKAPRGKLVV REVGVPILGL VSHSKPLEFE ASSQDSNCKT PTRRKRVLDT TLDDNALVVE  120
AKIPVGVRRR KWGKWAAEIR HPLEKTRIWL GTYDTLEDAA RAYDAKKLEF EALAVAAAAA  180
ATASSDKTYD ISCSASTSHT SNSVASVSEE SVSPSSHTTP SSVLELDTSA SVSFFNSNHD  240
SGNANKEGFD ANFANLVIPD LCFLDDPLLS GSVGQELNLD EEPSDYLFVN DSGVILEDYC  300
SIEDLSICGI EGNEPSELPD CDFSTDDFDF CKKVAPLNIL CP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276451e-122HQ527645.1 Gossypium herbaceum clone NBRI_B_EYI1BW404I0CI4 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464692.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_012464694.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_012464695.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A0D2VC320.0A0A0D2VC32_GOSRA; Uncharacterized protein
STRINGGorai.013G076100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.23e-34ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]