PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G082300.1
Common NameB456_013G082300, LOC105781144
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 486aa    MW: 52551 Da    PI: 6.5052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G082300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30185244159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+++d +++++tYeg+Hnh+
  Gorai.013G082300.1 185 MNDGCQWRKYGQKIAKGNPCPRAYYRCTLSpTCPVRKQVQRCSDDMSILITTYEGNHNHP 244
                         58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-32170246IPR003657WRKY domain
SuperFamilySSF1182901.96E-27177246IPR003657WRKY domain
PROSITE profilePS5081128.828180246IPR003657WRKY domain
SMARTSM007742.2E-36185245IPR003657WRKY domain
PfamPF031066.3E-27186244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGEVKEENER LKLLLCQIVK DYQSLHTRFL DVLKKEEANK STTTPIVGSH EENNEEHHQL  60
ISLSLGRSSS NDPPKKQEKK SSKDDDDDDD DGKHGNDGGG GLELGLECKF EPDGSIESEK  120
NNNPSCESSL GKPEEEEEEK EPTEVWPPSK ILKSVKNGDE EDVSEPMQLK KTRVSVRTRC  180
DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTLSPTCPVR KQVQRCSDDM SILITTYEGN  240
HNHPLPLSAT AMASTTSAAA SMLHSQSSTS QPALPTSLSA PTASLSTSTT HLHALSFNFS  300
QNPTPSHHYH FPNSSISTLN SHPTVTLDLT APPPPHNNYP SYFSRFSNLP TSSSSSSSSS  360
SCLNWKKTSS HLTFGGPLNN YPAIRQSPPY MQITNHQALS ETLTAAATKA ITSNPSFCSA  420
LAAALTSFVG NNGGSGGTAS ELGFASNSYL QGKKPSSMVN PHQQQKQGSL LLFPPSNTAS  480
DPPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22172246174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9080950.0DQ908095.1 Gossypium hirsutum clone LIB5327-041-A1-N1-E10_PS_Gh153 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461163.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A0D2TXH70.0A0A0D2TXH7_GOSRA; Uncharacterized protein
STRINGGorai.013G082300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2244145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-63WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]