PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G085500.1

Common Name

B456_013G085500, LOC105783927

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 293aa MW: 32152.8 Da PI: 8.1236

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G085500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.3	3.8e-33	44	100	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v YkeClkNh aslGgha+DGCgEfmps++++ +++ +lkCaACgCHRnFHRr++ Gorai.013G085500.1 44 VVSYKECLKNHVASLGGHALDGCGEFMPSPTSTpTDPVSLKCAACGCHRNFHRRDPY 100 689***************************99******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-18	45	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.9E-28	45	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.944	47	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.0E-30	47	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.6E-27	182	251	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-17	182	251	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.7E-25	190	247	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEVVNTKTTP YPQSESSSET HNPNEATTKS LTLLNSCTIH HHMVVSYKEC LKNHVASLGG 60 HALDGCGEFM PSPTSTPTDP VSLKCAACGC HRNFHRRDPY DAPPAFIHRL PPPPTHHSSS 120 PSPTHTPGLS PSPSPSPTHT PPSPVPYSYY SSAPHMLLAL STGYSGPLDE YHHHPRVGVI 180 EKNNNNPSGR KRSRTKFSKE QKQKMHDFAV RVGWRMPKGE EKLVKEFCDE VGVDRGVLKV 240 WMHNNKNNFG KKLEVLAVGN LNPDSNNNNN SEDNPNGNAT ISFDSNSDTP QQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-19	191	248	18	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, inflorescences, open flowers and seeds. Detected in stems and seedlings. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269\|PubMed:16428600, ECO:0000269\|PubMed:17233795}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269\|PubMed:17233795}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465096.1	0.0	PREDICTED: zinc-finger homeodomain protein 11-like
Swissprot	Q9SEZ1	6e-73	ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBL	A0A0D2SAR0	0.0	A0A0D2SAR0_GOSRA; Uncharacterized protein
STRING	Gorai.013G085500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5166	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	1e-52	zinc finger homeodomain 1

Link Out ? help Back to Top
Phytozome	Gorai.013G085500.1
Entrez Gene	105783927

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]