PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G088300.1
Common NameB456_013G088300, LOC105781172
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 334aa    MW: 37203.6 Da    PI: 8.3729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G088300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
  Gorai.013G088300.1 14 KGPWTPEEDQKLLAYIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61
                        79********************************************97 PP
2Myb_DNA-binding51.22.8e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++ +++++++lG++ W+ Ia++++ +Rt++++k++w+++l
  Gorai.013G088300.1  67 RGKFSLQEEQTIIQLHALLGNR-WSGIAAHLP-KRTDNEIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.971961IPR017930Myb domain
SuperFamilySSF466891.98E-3011108IPR009057Homeodomain-like
SMARTSM007174.2E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-161461IPR001005SANT/Myb domain
CDDcd001673.61E-111661No hitNo description
PROSITE profilePS5129425.71962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-2665117IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567112IPR001005SANT/Myb domain
CDDcd001676.37E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS GIAAHLPKRT DNEIKNYWNT HLKKRLNKMG  120
IDPVTHKPKT NALGSATGNP KDAATLSHMA QWESARLEAE ARLVRESKLV RFSSSSSSSS  180
SAPQHTSNPV MTPPATRPQC LDVLKAWQGL VTGLFTFNNT TDNLQSPTST LNFVENTNTL  240
ANGLINDNSM ELHEMGAWFR QDSSYRAVEN MNMEDYSDMM VWESGDHQQC SSMAAPAENL  300
NETSYGNSSS SSSSSSSLEE TRNYWNNILN LVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121175109B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461180.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9LE631e-111MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0D2VCI00.0A0A0D2VCI0_GOSRA; Uncharacterized protein
STRINGGorai.013G088300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2059745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-108myb domain protein 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]