PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G088400.1
Common NameB456_013G088400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 303aa    MW: 34393.7 Da    PI: 7.2909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G088400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-171259148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed++l+ +++++G g+W+t +++ g+ R++k+c++rw +yl
  Gorai.013G088400.1 12 KGPWTPDEDQKLLAYIEEHGLGNWRTFPEKAGLQRCGKSCRLRWINYL 59
                        79********************************************97 PP
2Myb_DNA-binding53.55.4e-1765109147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++ +E++ ++++++ lG++ W+tIa++++ +Rt++++k++w+++
  Gorai.013G088400.1  65 RGKFSLQEEQTIIQLHAFLGNR-WSTIAAHLP-NRTDNEIKNYWNTH 109
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.727763IPR017930Myb domain
SuperFamilySSF466898.99E-318106IPR009057Homeodomain-like
SMARTSM007173.9E-121161IPR001005SANT/Myb domain
PfamPF002495.2E-151259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-241366IPR009057Homeodomain-like
CDDcd001673.04E-101459No hitNo description
PROSITE profilePS5129418.55664114IPR017930Myb domain
SMARTSM007174.4E-1664112IPR001005SANT/Myb domain
PfamPF002491.5E-1565109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2667113IPR009057Homeodomain-like
CDDcd001671.57E-1067110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MADCREKMGL KKGPWTPDED QKLLAYIEEH GLGNWRTFPE KAGLQRCGKS CRLRWINYLR  60
PDLKRGKFSL QEEQTIIQLH AFLGNRWSTI AAHLPNRTDN EIKNYWNTHV KKRFTKMGID  120
PTTHKPKSNH VVSPTGRTTL NHMAQWESAR LEAEARLVKD SKNLPSSSSR PSPYQKSCNK  180
GSKSQCLDVV KAWQSVVAGM FATSTNNSNR IIFGPDQSSG NYELDSIIPI GGNVEDELMV  240
GNDRSKCQVP ELNERFDNYM SLHDTTHLWA APIAENDVVE GFPDFLVHDF DYQIDNEESI  300
TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26101145108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704155.10.0PREDICTED: uncharacterized protein LOC107919142
SwissprotQ9LE635e-89MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0D2SAV60.0A0A0D2SAV6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KNY90.0A0A1U8KNY9_GOSHI; uncharacterized protein LOC107919142
STRINGGorai.013G088400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2504433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-89myb domain protein 106
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]