PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G098000.1

Common Name

B456_013G098000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 328aa MW: 36349.1 Da PI: 6.5162

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G098000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.5	3.8e-16	56	105	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P+ ++K + a+ L +++eY+++Lq Gorai.013G098000.1 56 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTASFLLEVIEYVQYLQ 105 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-19	52	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-24	52	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.444	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-13	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.11E-15	56	109	No hit	No description
SMART	SM00353	1.6E-12	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MRTGKGSQEE EEYEEEEFGS KKGGFSSNQT MSFNPNNNST TNKADGKNND KANAIRSKHS 60 VTEQRRRSKI NERFQRLRDL IPNTDQKRDT ASFLLEVIEY VQYLQEKVQK YEDSYQGWSS 120 EPAKLMPWRN SHWHVQSLVG HPQAIKNGSG PGATFARKFD ENNTNINPTV ITSGPNAVET 180 DPIRYVTSKT MDCQTELANN GTHLPIQGEN VLVHPLQRPV SETQSTECLV GNDIPINQQE 240 DLTIEGGTIS ISSVYSQGLL SALAQALQGS GLDLSQANMS VQIDLGKHAN RGLSAKEPHN 300 CPHQAMTHLR DVSSGEDSDN AQKRLKK*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464562.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-112	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0D2VD29	0.0	A0A0D2VD29_GOSRA; Uncharacterized protein
STRING	Gorai.013G098000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	4e-87	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Gorai.013G098000.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]