PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G098000.3
Common NameB456_013G098000, LOC105783567
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 318aa    MW: 35141.7 Da    PI: 6.6814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G098000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-115591242
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKae 42
                        r +h+  E+rRR++iN++f++Lr+l+P+     ++K + a+
  Gorai.013G098000.3 55 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTAS 91
                        899*************************7....45555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1251113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.76953103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.71E-1055101No hitNo description
PfamPF000105.2E-95592IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MRTGKGSQEE EEYEEEEFGS KKGGFSSNQT MSFNPNNNST TNKDGKNNDK ANAIRSKHSV  60
TEQRRRSKIN ERFQRLRDLI PNTDQKRDTA SFLLEEKVQK YEDSYQGWSS EPAKLMPWRN  120
SHWHVQSLVG HPQAIKNGSG PGATFARKFD ENNTNINPTV ITSGPNAVET DPIRYVTSKT  180
MDCQTELANN GTHLPIQGEN VLVHPLQRPV SETQSTECLV GNDIPINQQE DLTIEGGTIS  240
ISSVYSQGLL SALAQALQGS GLDLSQANMS VQIDLGKHAN RGLSAKEPHN CPHQAMTHLR  300
DVSSGEDSDN AQKRLKK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464563.10.0PREDICTED: transcription factor BIM2-like isoform X2
SwissprotQ9CAA41e-103BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0D2SBC00.0A0A0D2SBC0_GOSRA; Uncharacterized protein
STRINGGorai.013G098000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-77BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]