PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G113000.2

Common Name

B456_013G113000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 210aa MW: 23563.5 Da PI: 6.7786

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G113000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35	3.3e-11	2	36	12	48
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Gorai.013G113000.2 2 IIHLQALLGNK-WAAIASYLP-QRTDNDVKNYWNTHL 36 5788899**.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-15	1	37	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.812	1	40	IPR017930	Myb domain
SMART	SM00717	0.0052	1	38	IPR001005	SANT/Myb domain
CDD	cd00167	5.55E-7	1	36	No hit	No description
SuperFamily	SSF46689	4.73E-10	2	42	IPR009057	Homeodomain-like
Pfam	PF00249	7.1E-10	2	36	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MIIHLQALLG NKWAAIASYL PQRTDNDVKN YWNTHLKKKL KKFQPAMELP QMAQACLNKT 60 LATGSSSTIA TYASSTENIS RLLQGWMRAS PNICSNQSAI ILQTQSKDES GGRDLMSNEH 120 FESILRFENM NNVAWEKSAC GSTTSKGGFQ DSGNDDQFSV EITQEMKQKT GNNSKFYPSF 180 SSLEKWLLDD SWAGKVEEMN QWMELSPIF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During seed development, gradually down-regulated towards the onset of ripening (veraison). During berry skin development, dramatic decrease to full repression at veraison, followed by a slight increase towards ripening. In flowers, barely detectable in stamens, at the interface of filaments and anthers. {ECO:0000269\|PubMed:22018045}.
Uniprot	TISSUE SPECIFICITY: Restricted to stomatal guard cells. Mostly expressed in leaves, cotyledons, hypocotyls, seeds and ripened berry skins. {ECO:0000269\|PubMed:22018045}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229564	4e-35	KP229564.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB08) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461145.1	1e-153	PREDICTED: myb-related protein 306-like
Swissprot	B3VTV7	2e-49	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A0D2SBH3	1e-154	A0A0D2SBH3_GOSRA; Uncharacterized protein
STRING	Gorai.013G113000.1	1e-153	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	6e-34	myb domain protein 60

Link Out ? help Back to Top
Phytozome	Gorai.013G113000.2

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]