PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G121800.1

Common Name

B456_013G121800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 465aa MW: 50950.5 Da PI: 4.8036

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G121800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	113.4	1.4e-35	162	262	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 lfqrlw++eDei lL+G++d+++++ + ++d+ fy+ +k++++++++k+qlveK+rrLKkK+++ ++k++sgke+sf+++hdq Gorai.013G121800.1 162 LFQRLWTDEDEIELLKGFLDYTTSKTNsnsshHHHHDTALFYDLIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKINSGKEFSFKSPHDQA 252 79*****************7766554544334459999*********************************************** PP DUF573 88 ifelskkiWg 97 +fe+s+kiW Gorai.013G121800.1 253 TFEISRKIWS 262 *******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.9E-32	163	262	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MGYEPHTGQT LTKLTSFLSP SPTRFFNQQN PREPLSFSTL SLMASEQYGA VFEESQDDDE 60 EPSSSGNDDV LNGNDEEDEE LLEEEEEEDF NSPSLLPQPI AAVVPSASIP AVPLAVPSST 120 VVTVASVPLG GSIPDSKRQR IDSAVSEKKP PPPQQFDESR RLFQRLWTDE DEIELLKGFL 180 DYTTSKTNSN SSHHHHHDTA LFYDLIKSKL QLDFNKNQLV EKLRRLKKKY RNVMNKINSG 240 KEFSFKSPHD QATFEISRKI WSSSVGKVED NVLDYDENNI TPPTTTNINL LDESGEKKNL 300 TPKSAANKRR SRSKGGKLEE KRVLNDGFVI SNNNFNNRSD HDQGNVEGLG GGGGGAGGER 360 GNLTAVVEET VKSCLTPVFK ELLGSLIGGG GGGGRGISGM AMNAMPLSFG GTLNFGGGGG 420 GNVEFMDERW RKQQILELEV YSKRLELVQD QIKVALEELR SIGG*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MGYEPHTGQT LTKLTSFLSP SPTRFFNQQN PREPLSFSTL SLMASEQYGA VFEESQDDDE  60
EPSSSGNDDV LNGNDEEDEE LLEEEEEEDF NSPSLLPQPI AAVVPSASIP AVPLAVPSST  120
VVTVASVPLG GSIPDSKRQR IDSAVSEKKP PPPQQFDESR RLFQRLWTDE DEIELLKGFL  180
DYTTSKTNSN SSHHHHHDTA LFYDLIKSKL QLDFNKNQLV EKLRRLKKKY RNVMNKINSG  240
KEFSFKSPHD QATFEISRKI WSSSVGKVED NVLDYDENNI TPPTTTNINL LDESGEKKNL  300
TPKSAANKRR SRSKGGKLEE KRVLNDGFVI SNNNFNNRSD HDQGNVEGLG GGGGGAGGER  360
GNLTAVVEET VKSCLTPVFK ELLGSLIGGG GGGGRGISGM AMNAMPLSFG GTLNFGGGGG  420
GNVEFMDERW RKQQILELEV YSKRLELVQD QIKVALEELR SIGG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577819	1e-140	JX577819.1 Gossypium hirsutum clone NBRI_GE9719 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463707.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A0D2VCS1	0.0	A0A0D2VCS1_GOSRA; Uncharacterized protein
STRING	Gorai.013G121800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-65	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.013G121800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]