PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G126700.1

Common Name

B456_013G126700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 239aa MW: 25891.1 Da PI: 8.2199

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G126700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H Gorai.013G126700.1 84 FTCGFCSKQFSTSQALGGHQNAH 106 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.18E-6	81	111	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-5	82	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.676	84	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
METLCVKLPC SSDTCSISPP SNGETQNMMN ATKLKEKASV DDVHEHPKPS GFHLPLGDES 60 VELRLSSMIS SPKPQQQSSK GRAFTCGFCS KQFSTSQALG GHQNAHKQER AIAKRRKEMD 120 VGALAPQQYP FYSYSTLSQG SLYGSFNRSL GIKMDAMIQK PPISGYPWNS LGYRFGHGGI 180 VMDGLQSQKS SVLPTPASTI APKKWTSSID FHVSASEGYH RNDAADDDDS GLDLSLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461942.1	1e-178	PREDICTED: zinc finger protein KNUCKLES-like
TrEMBL	A0A0D2VEI0	1e-177	A0A0D2VEI0_GOSRA; Uncharacterized protein
STRING	Gorai.013G126700.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	4e-21	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.013G126700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]