PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G143000.1
Common NameB456_013G143000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 243aa    MW: 28141.6 Da    PI: 6.0382
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G143000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.1e-11956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W+ +Ed +l+ ++ ++G  +W+  +++ g+ R++k+ ++rw +yl
  Gorai.013G143000.1  9 KGTWSRDEDHKLIAYIVRYGIWNWNEMPKHAGLQRSGKSSRLRWMNYL 56
                        799*****************99************************97 PP
2Myb_DNA-binding51.62.1e-1662105146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T eE+e +v++ k lG++ W++Ia++++  Rt++++k++w++
  Gorai.013G143000.1  62 RGNFTREEEETIVRLQKILGNR-WSAIAARLP-QRTDNDIKNYWNT 105
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.313456IPR017877Myb-like domain
SuperFamilySSF466897.65E-257103IPR009057Homeodomain-like
SMARTSM007171.0E-6858IPR001005SANT/Myb domain
PfamPF002491.1E-9956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-191063IPR009057Homeodomain-like
CDDcd001679.50E-61156No hitNo description
PROSITE profilePS5129424.54857111IPR017930Myb domain
SMARTSM007171.0E-1461109IPR001005SANT/Myb domain
PfamPF002492.3E-1462105IPR001005SANT/Myb domain
CDDcd001672.19E-1064107No hitNo description
Gene3DG3DSA:1.10.10.608.7E-2564111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVRQPYLKKG TWSRDEDHKL IAYIVRYGIW NWNEMPKHAG LQRSGKSSRL RWMNYLRPNI  60
RRGNFTREEE ETIVRLQKIL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VISENKNSTA  120
ATTSTKETNS SMMENSSDAD SSSMLTNILL DSPVSTIDDL LEPPAYSCFS PSGSDLVAVD  180
DKYSMSTDNF LVSCWETQSY LEQPQMIEGL DWEAVLPNSE LWHSHHQQCY DPLDDFWINP  240
LI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2651113108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704182.11e-178PREDICTED: transcription factor WER-like
SwissprotQ7XBH41e-46MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A0D2VDR11e-180A0A0D2VDR1_GOSRA; Uncharacterized protein
STRINGGorai.013G143000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-47myb domain protein 74
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]