PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G143100.1
Common NameB456_013G143100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 244aa    MW: 28381.7 Da    PI: 6.4015
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G143100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-14956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ +Ed++l+ +++++G  +W+  +r  g+ R++k+c++rw +yl
  Gorai.013G143100.1  9 KGSWSRDEDQKLIAYITRYGIWNWNEMPRFAGLQRSGKSCRLRWVNYL 56
                        799*****************99************************97 PP
2Myb_DNA-binding48.91.5e-1562105146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ eE+e ++++ k lG++ W++Ia++++  Rt++++k++w++
  Gorai.013G143100.1  62 RGNFSREEEETIIHLQKTLGNR-WSAIAARLP-QRTDNDIKNYWNS 105
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.461456IPR017930Myb domain
SuperFamilySSF466892.55E-277103IPR009057Homeodomain-like
SMARTSM007178.5E-10858IPR001005SANT/Myb domain
PfamPF002492.3E-11956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-211063IPR009057Homeodomain-like
CDDcd001672.56E-81156No hitNo description
PROSITE profilePS5129423.72557111IPR017930Myb domain
SMARTSM007175.4E-1461109IPR001005SANT/Myb domain
PfamPF002494.4E-1462105IPR001005SANT/Myb domain
CDDcd001671.07E-964107No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2464111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVRQPYLKKG SWSRDEDQKL IAYITRYGIW NWNEMPRFAG LQRSGKSCRL RWVNYLRPNI  60
RRGNFSREEE ETIIHLQKTL GNRWSAIAAR LPQRTDNDIK NYWNSRLKKR VIVENNNSAS  120
SPTETKSKTK SSVEENSSDA DSSMMLGIFL DSDTRGMHDF AEIAADTTFF PSGSDPSVAV  180
DDHYSMAMDN YLVSYWEILS FLEQPQMIEG LDCEAISQNS QQWHSHHQQY YDPLHDFWVN  240
PLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2751113108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675131.11e-171PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0D2SDZ80.0A0A0D2SDZ8_GOSRA; Uncharacterized protein
STRINGGorai.013G143100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-48MYB-like 102
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]