PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G143200.1
Common NameB456_013G143200, LOC105781903
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 247aa    MW: 28756.4 Da    PI: 4.7987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G143200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W+ +Ed++l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
  Gorai.013G143200.1  9 KGTWSHDEDQKLIAYIRKYGIWNWNEMPKFAGLQRSGKSCRLRWMNYL 56
                        799*****************99************************97 PP
2Myb_DNA-binding49.31.1e-1562105146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ eE+e ++++ k lG++ W++Ia++++  Rt++++k++w++
  Gorai.013G143200.1  62 RGNFSREEEETIIHLQKTLGNR-WSAIAARLP-QRTDNDIKNYWNT 105
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.757456IPR017930Myb domain
SuperFamilySSF466894.97E-287103IPR009057Homeodomain-like
SMARTSM007174.7E-11858IPR001005SANT/Myb domain
PfamPF002496.1E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-211063IPR009057Homeodomain-like
CDDcd001672.43E-91156No hitNo description
PROSITE profilePS5129423.92257111IPR017930Myb domain
SMARTSM007172.5E-1461109IPR001005SANT/Myb domain
PfamPF002493.3E-1462105IPR001005SANT/Myb domain
CDDcd001679.04E-1064107No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2464110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVRQPYLKKG TWSHDEDQKL IAYIRKYGIW NWNEMPKFAG LQRSGKSCRL RWMNYLRPNI  60
RRGNFSREEE ETIIHLQKTL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VMGEKKNPSS  120
ATTETKSSME ENSSDADSSM MVDILLDYQI PTMDDFPELA ADTTISLSDC NLSVAVDDHY  180
NMAMDNNLVS SENYWEIENL WGQSLTMEGL DCEVMSPNSQ LWLHEPIYAC DSYYDPVVEL  240
WVNPFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2751113108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5895715e-66JX589571.1 Gossypium hirsutum clone NBRI_GE24298 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461887.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A0D2U1B70.0A0A0D2U1B7_GOSRA; Uncharacterized protein
STRINGGorai.013G143200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-50MYB-like 102
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]