PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G143300.1
Common NameB456_013G143300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 183aa    MW: 20979.4 Da    PI: 7.4999
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G143300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07944137
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        +g W+ +Ed++l+ +++++G  +W+  +  ++ gR +
  Gorai.013G143300.1  9 KGTWSRDEDQKLIAYITRYGIWNWNECPDFLQ-GRRR 44
                        799*****************99*********9.9976 PP
2Myb_DNA-binding35.62.1e-1148811146
                        HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +l+++ k lG++ W+ Ia++++  Rt++++k++w++
  Gorai.013G143300.1 48 RLIHLQKTLGNR-WSVIAARLP-QRTDNDIKNYWNT 81
                        89**********.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-9544IPR009057Homeodomain-like
SuperFamilySSF466892.56E-15779IPR009057Homeodomain-like
SMARTSM007171.4E-10885IPR001005SANT/Myb domain
CDDcd001671.49E-81183No hitNo description
PROSITE profilePS5129412.8233987IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-154784IPR009057Homeodomain-like
PfamPF002491.3E-94881IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVRQSYLKKG TWSRDEDQKL IAYITRYGIW NWNECPDFLQ GRRRNPNRLI HLQKTLGNRW  60
SVIAARLPQR TDNDIKNYWN TRLKKRINLE DNNSASATTS ATETNSGIEE KSSGADSSLL  120
FGNIMLDSPV YATFSTLGSD LSVASFLEQA RMIEGLDCEA MSQNSQLCHS HHQQYYDLLD  180
YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-147885109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461561.11e-100PREDICTED: transcription factor MYB23-like
TrEMBLA0A0D2VFB21e-134A0A0D2VFB2_GOSRA; Uncharacterized protein
STRINGGorai.013G143300.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3719122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-21myb domain protein 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]