PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G155300.1

Common Name

B456_013G155300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 221aa MW: 24726.8 Da PI: 9.4908

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G155300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.6	6.5e-08	2	31	11	40
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviif 40 t+ kR +g+ K ELS+LC+++ + i++ Gorai.013G155300.1 2 ATYKKRIKGLKNKMRELSTLCGIDTCAIMY 31 59**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	8.774	1	32	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.19E-16	1	68	No hit	No description
Pfam	PF00319	7.0E-9	2	32	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-13	2	78	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
KATYKKRIKG LKNKMRELST LCGIDTCAIM YNLYKSQPEV WPSPVVVQQI LSKLKTIPEM 60 EKNKNMMNQK TFLSQKITKV MVNNICSKEV IHGLNFGAFS DINILLDKKM SDIDKRIEAL 120 SRAPLNPQGL SSLSSSSMVA LPSMTMVTPE AMPRTGTENI VQPDVKNMDP MQRQQWIMDL 180 MSNNNNNPQT HVGGDEIMFQ FGDNINPNNG LCSNVSFPLN *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473527.1	1e-108	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A0D2SET3	1e-161	A0A0D2SET3_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.013G155300.1	1e-161	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	9e-24	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Gorai.013G155300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]