PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G155500.1
Common NameB456_013G155500, LOC105782607
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 562aa    MW: 61094.4 Da    PI: 6.8211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G155500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.6e-32215272260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gorai.013G155500.1 215 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 272
                         8****************************************.***************85 PP
2WRKY106.51.3e-33378436159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k++er+++dpk+v++tYeg+Hnh+
  Gorai.013G155500.1 378 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHIERASHDPKAVITTYEGKHNHD 436
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27208273IPR003657WRKY domain
PROSITE profilePS5081123.525209273IPR003657WRKY domain
SuperFamilySSF1182903.92E-25211273IPR003657WRKY domain
SMARTSM007744.1E-34214272IPR003657WRKY domain
PfamPF031061.6E-24215271IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37363438IPR003657WRKY domain
SuperFamilySSF1182904.58E-29370438IPR003657WRKY domain
PROSITE profilePS5081138.939373438IPR003657WRKY domain
SMARTSM007741.3E-38378437IPR003657WRKY domain
PfamPF031068.2E-26379436IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEEQILASHS AAASATQHDL SASAASSGAR YKLVAPAKLP ISRSACITIP PGLSPSSFLE  60
SPVLLSDVKA EPSPTTGSLI KPQAVHGSVN SSTYSVTAAC SNAFDERNPS CFEFRPHPRS  120
NLAPADLNHH RSEQSLQIQG QYQTISYNSS ALVKSEMAGS SNELSLSVPF HTATSVASAP  180
VEVDVDELNQ SGNSNSGMQS GQTDHRVSGS STISDDGYNW RKYGQKHVKG SEFPRSYYKC  240
THPNCEVKKL FERSHDGQIT EIIYKGTHDH PKPQPSRRYS SGNTMSVQEE RFDKVPPLTG  300
RDDKSSNMYG QMAHSIEPNN TADSSPVTAN DDNVDDVDDD DPFSKRRKMD GGIDIIPVVK  360
PIREPRVVVQ TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTSAGCP VRKHIERASH  420
DPKAVITTYE GKHNHDVPTA KTSSHDIAGP VTVNALSRIR SEENDAISLD LGVGISPAPE  480
NSSNEHQQLH SELLQSHHQT GGSSFKLHQV TPMTAYYGVP NGGMNQYGSR EAPSEGRTVD  540
ITPLNHSYAY SQTMGRILTG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37200438377Probable WRKY transcription factor 4
2lex_A5e-37200438377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697620.0KF669762.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462907.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2U1W10.0A0A0D2U1W1_GOSRA; Uncharacterized protein
STRINGGorai.013G155500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]