PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G155500.2
Common NameB456_013G155500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 547aa    MW: 59409.6 Da    PI: 6.8503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G155500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.4e-32200257260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gorai.013G155500.2 200 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 257
                         8****************************************.***************85 PP
2WRKY106.61.3e-33363421159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+CtsagCpv+k++er+++dpk+v++tYeg+Hnh+
  Gorai.013G155500.2 363 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSAGCPVRKHIERASHDPKAVITTYEGKHNHD 421
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27193258IPR003657WRKY domain
PROSITE profilePS5081123.525194258IPR003657WRKY domain
SuperFamilySSF1182903.79E-25196258IPR003657WRKY domain
SMARTSM007744.1E-34199257IPR003657WRKY domain
PfamPF031061.6E-24200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37348423IPR003657WRKY domain
SuperFamilySSF1182904.45E-29355423IPR003657WRKY domain
PROSITE profilePS5081138.939358423IPR003657WRKY domain
SMARTSM007741.3E-38363422IPR003657WRKY domain
PfamPF031067.9E-26364421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEEQILASHS AAASATQHDL SASAASSGAR YKLVAPAKLP ISRSACITIP PGLSPSSFLE  60
SPVLLSDVKA EPSPTTGSLI KPQAVHGSVN SSTYSVTAAC SNAFDERNPS CFEFRPHPRS  120
NLIQGQYQTI SYNSSALVKS EMAGSSNELS LSVPFHTATS VASAPVEVDV DELNQSGNSN  180
SGMQSGQTDH RVSGSSTISD DGYNWRKYGQ KHVKGSEFPR SYYKCTHPNC EVKKLFERSH  240
DGQITEIIYK GTHDHPKPQP SRRYSSGNTM SVQEERFDKV PPLTGRDDKS SNMYGQMAHS  300
IEPNNTADSS PVTANDDNVD DVDDDDPFSK RRKMDGGIDI IPVVKPIREP RVVVQTLSEV  360
DILDDGYRWR KYGQKVVRGN PNPRSYYKCT SAGCPVRKHI ERASHDPKAV ITTYEGKHNH  420
DVPTAKTSSH DIAGPVTVNA LSRIRSEEND AISLDLGVGI SPAPENSSNE HQQLHSELLQ  480
SHHQTGGSSF KLHQVTPMTA YYGVPNGGMN QYGSREAPSE GRTVDITPLN HSYAYSQTMG  540
RILTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37185423377Probable WRKY transcription factor 4
2lex_A5e-37185423377Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697620.0KF669762.1 Gossypium hirsutum WRKY transcription factor 14 (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012462907.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2VE950.0A0A0D2VE95_GOSRA; Uncharacterized protein
STRINGGorai.013G155500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]