PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G164700.1
Common NameB456_013G164700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 462aa    MW: 51991.4 Da    PI: 8.0679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G164700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.31.2e-130884581374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+a+s++++ + ++l+a+ ++ +s +g+p+qRl ay++e+L ar   s+s++y+al+++e +    +e l+++++++e++P+l
  Gorai.013G164700.1  88 LRQLLIACAKALSENKMDEFDELIAKAKDAVSIAGEPIQRLGAYMVEGLVARKEASGSNIYRALRCREPE---GKELLSYMHILYEICPYL 175
                         689******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea  +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   le++g+rL+ + e++++p+ef+ 
  Gorai.013G164700.1 176 KFGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWVTLLQALAARPGGAPRVRITGIDDPVSKyaRGGGLEAVGRRLSALSEKFNIPVEFHG 266
                         ***********************************************************99999999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     d++ ++L+++pgEalaVn+ lqlh+++desv+++++rd +L+lvkslsPkv ++ eqe+++n+++Fl rf+e+leyy a+f+s+
  Gorai.013G164700.1 267 -VPVFAPDVTRDMLSLRPGEALAVNFPLQLHHTPDESVDVNNPRDGILRLVKSLSPKVTTLLEQESNTNTAPFLPRFIETLEYYLAIFESI 356
                         .688899************************************************************************************ PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+ +eri+vE+++l+r+ivn++aceg+er+erhe l+kW++rl++aGF+++pls+++++ +++llr +++  y++ e++g+++l W
  Gorai.013G164700.1 357 DETLPRDRKERINVEQQCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRYYSK-HYTLVEKDGAMLLRW 446
                         ***********************************************************************9995.5************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         kdr+L+s+SaWr
  Gorai.013G164700.1 447 KDRNLISASAWR 458
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.08962439IPR005202Transcription factor GRAS
PfamPF035144.2E-12888458IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MIYTSQELDS ALREPDRDKD VTTPSVSRPR ETGPRSRTWS QESQGSLVLQ PQTSFVSRHR  60
QSAEAVHVEK RQKAIEDLSL HGIPPGNLRQ LLIACAKALS ENKMDEFDEL IAKAKDAVSI  120
AGEPIQRLGA YMVEGLVARK EASGSNIYRA LRCREPEGKE LLSYMHILYE ICPYLKFGYM  180
AANGAIAEAC RNEDHIHIID FQIAQGTQWV TLLQALAARP GGAPRVRITG IDDPVSKYAR  240
GGGLEAVGRR LSALSEKFNI PVEFHGVPVF APDVTRDMLS LRPGEALAVN FPLQLHHTPD  300
ESVDVNNPRD GILRLVKSLS PKVTTLLEQE SNTNTAPFLP RFIETLEYYL AIFESIDETL  360
PRDRKERINV EQQCLARDIV NIIACEGKER VERHELLGKW KSRLTMAGFR QYPLSSYVNS  420
VIRSLLRYYS KHYTLVEKDG AMLLRWKDRN LISASAWRCN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-63904586375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.13580.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488278860.0
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703488.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0D2VGA70.0A0A0D2VGA7_GOSRA; Uncharacterized protein
STRINGGorai.013G164700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145381022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]