PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G179400.4
Common NameB456_013G179400
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 613aa    MW: 66493.6 Da    PI: 6.4566
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G179400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.6e-33123180260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh+k
  Gorai.013G179400.4 123 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHPK 180
                         7****************************************.***************85 PP
2WRKY1023.4e-32341399159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver++++ k+v +tY g+Hnhe
  Gorai.013G179400.4 341 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHNLKCVLTTYDGKHNHE 399
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-29113181IPR003657WRKY domain
PROSITE profilePS5081123.548117181IPR003657WRKY domain
SuperFamilySSF1182903.01E-26118181IPR003657WRKY domain
SMARTSM007743.4E-37122180IPR003657WRKY domain
PfamPF031061.9E-25123179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-35326401IPR003657WRKY domain
SuperFamilySSF1182909.81E-28334401IPR003657WRKY domain
PROSITE profilePS5081136.965336401IPR003657WRKY domain
SMARTSM007742.0E-36341400IPR003657WRKY domain
PfamPF031063.4E-24342399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDSQPSFSSL EDQVSSSLNL VQRAEVDYQP LVHLGTPLDF EFPAEFSKEA TSRSFAADSV  60
AEVKVLNNIV NDNVNLGCHP SELAGDRTSM QKVPFNGQDV STNLSESDPK GTNTTAGTAR  120
TSEDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCQVKKKVE RSLDGQITEI IYKGAHNHPK  180
PQPCRPSLGS SSSSNEMSES AEGNGTCVKI ESGLIWKNTQ AGSKDIKLGS DLRADGLERT  240
SSTSVITDLS DPLSTAQGKS VGVFESADTP EFSSTLASND DDNDDRATQG SISLCDDAAN  300
DDESESKRRK TESCSTEMNV ASGAIREPRV VVQIESEVDI LDDGYRWRKY GQKVVKGNPN  360
PRSYYKCTSP GCPVRKHVER ASHNLKCVLT TYDGKHNHEV PAARSSSHVN TSACNLPPTV  420
PNSQAALALS RNSHVLKPET PIQDIAPPFD RKPEFKIEYM RPSFLGDFSN EMKLGTASLA  480
SVYQMKFPSL QKAIPYGTFG LNPNCIATRS SGSIASTVPN FPISMPLNLP TSANLSLAGF  540
DINNGGKPAA PIHSFLPGQQ FKENAARFHG IKQELKDDNH YDPCLPIVDH ASATSSSSSS  600
VYRQQATGNF PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-34111402178Probable WRKY transcription factor 4
2lex_A2e-34111402178Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311710.0AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464728.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_012464729.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A0D2W7720.0A0A0D2W772_GOSRA; Uncharacterized protein
STRINGGorai.013G179400.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.16e-94WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]