PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G196400.1

Common Name

B456_013G196400, LOC105784500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 245aa MW: 26583.6 Da PI: 5.6396

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G196400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.7	1.5e-16	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +ps++e ++ k l ++ +++V++WFqNrR + ++ Gorai.013G196400.1 22 RSRWTPKPEQILILESIFNSgMVNPSKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 82 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.6	7.3e-35	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Gorai.013G196400.1 21 VRSRWTPKPEQILILESIFNSGMVNPSKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 84 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.55E-15	15	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.936	18	83	IPR001356	Homeobox domain
SMART	SM00389	1.4E-7	20	87	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-9	21	87	IPR009057	Homeodomain-like
CDD	cd00086	0.00262	22	77	No hit	No description
Pfam	PF00046	3.1E-14	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEDHGPDPNS PSHVSERSEP VRSRWTPKPE QILILESIFN SGMVNPSKDE TVRIRKLLEK 60 FGSVGDANVF YWFQNRRSRS RRRQRQLQAS LAAGSEQRNN NPQAQAVYGG GAIQYDNSGA 120 AAAAAMGFAP PPFPVGSSSS CGVMGDDGFE NLLSMSAQMG FQELGQSSSV SETSNLHYQT 180 GFITVFINGV PTEVPRGPLD VKAMFGEDVD LVHSSGVPIP INEFGFLLQS LQHGESYFLV 240 SRVT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465852.1	0.0	PREDICTED: WUSCHEL-related homeobox 11-like
Swissprot	Q6X7J3	5e-74	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A0D2W7P0	1e-179	A0A0D2W7P0_GOSRA; Uncharacterized protein
STRING	Gorai.013G196400.1	1e-180	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	4e-73	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Gorai.013G196400.1
Entrez Gene	105784500

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]