PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G210000.3

Common Name

B456_013G210000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 229aa MW: 27001.2 Da PI: 6.2748

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G210000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	161	185	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C+ C+k ++ +++++H+++ H Gorai.013G210000.3 161 FYCELCNKQYKLAMEFEVHLSSydH 185 79*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	8.5E-17	64	109	IPR000467	G-patch domain
PROSITE profile	PS50174	16.477	66	111	IPR000467	G-patch domain
Pfam	PF01585	1.1E-15	67	107	IPR000467	G-patch domain
SuperFamily	SSF57667	4.62E-5	147	189	No hit	No description
Pfam	PF12171	1.4E-5	161	188	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	163	185	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDYRRYNSSQ GANLGTKQQI SEEQAYQDSL VEDLAEDFRL PINHKPTENV DLDNVQQATL 60 DTKLNSSNVG FRLLQKMGWK GKGLGKDEQG IIEPIRSGIR DPKLGIGKQE EDDFFTAEEN 120 IQRRKLDIEV EETEEHAKKR EVLAEREQKI QTEVKEIRKV FYCELCNKQY KLAMEFEVHL 180 SSYDHNHRKR FKEMREMHGS SSRDDRQKRE QQRQEREMAK FAQMYLIN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464822.1	1e-167	PREDICTED: G patch domain-containing protein 8
TrEMBL	A0A0D2SHM2	1e-168	A0A0D2SHM2_GOSRA; Uncharacterized protein
STRING	Gorai.013G210000.1	1e-166	(Gossypium raimondii)

Link Out ? help Back to Top
Phytozome	Gorai.013G210000.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]