PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G210700.1
Common NameB456_013G210700, LOC105784180
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 164aa    MW: 19018.2 Da    PI: 10.9047
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G210700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.3e-151151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+++r++t  kR +g+lKK  EL +LC +e++ ii+s++
  Gorai.013G210700.1 11 ITNDTKRKTTCKKRTKGLLKKVRELTTLCKIEACAIILSPD 51
                        89*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.895149IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-18161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-21395IPR002100Transcription factor, MADS-box
CDDcd002664.38E-21386No hitNo description
PRINTSPR004042.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSRKKMKLAY ITNDTKRKTT CKKRTKGLLK KVRELTTLCK IEACAIILSP DFDSQPEVWP  60
SHTGAQQLLS QFKKLPQSIR NNKMVNQESF LEQSIAKATQ QLKKRRNENR QKDLKKFMFQ  120
SLSGKWILQS MNVMDLNEVG VFVEQNLKDI DKRVRVLTNE SRS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465438.11e-117PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-50AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0D2VGM31e-115A0A0D2VGM3_GOSRA; Uncharacterized protein
STRINGGorai.013G210700.11e-116(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-49AGAMOUS-like 80
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]