PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G222700.1
Common NameB456_013G222700, LOC105782007
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 215aa    MW: 23826.4 Da    PI: 5.8932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G222700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-153484155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++kG r +k +g+Wv+e+r p++   r r++lg+++tae+Aa+a +aa  +l+g
  Gorai.013G222700.1 34 SQFKGARKRK-WGKWVSEVRLPNS---RERIWLGSYDTAEKAARAFDAAVFCLRG 84
                        6899999998.*******999833...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-273494No hitNo description
SuperFamilySSF541711.7E-193493IPR016177DNA-binding domain
PROSITE profilePS5103221.2323592IPR001471AP2/ERF domain
SMARTSM003801.3E-303598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-283593IPR001471AP2/ERF domain
PfamPF008471.4E-83584IPR001471AP2/ERF domain
PRINTSPR003676.6E-93647IPR001471AP2/ERF domain
PRINTSPR003676.6E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSLHTPHHHY YNFLHSKTMV KLRNEKPRGE RNESQFKGAR KRKWGKWVSE VRLPNSRERI  60
WLGSYDTAEK AARAFDAAVF CLRGPSAKFN FPHNPPDIAF GKSLTPSEIQ AFAARFANSE  120
PPATIHSEQS TSSCGTESPS PSVRLEWETP VVGSFTDGLT MDSGNYGLDY GIFPGFDDFS  180
SDVVIGSSVG NIGGEEEEDK VDGILVSESF LWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1535931473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461968.11e-159PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC21e-49ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2U5G81e-158A0A0D2U5G8_GOSRA; Uncharacterized protein
STRINGGorai.013G222700.11e-158(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]