PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G226200.1

Common Name

B456_013G226200, LOC105783980

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 323aa MW: 35950 Da PI: 7.6298

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G226200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103	2.8e-32	185	241	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVN+KQy++Il+RRq Rakle+++kl ksrkpylheSRh+hAl+R RgsgGrF Gorai.013G226200.1 185 DEPIYVNPKQYHGILRRRQYRAKLEAQNKL-VKSRKPYLHESRHRHALNRVRGSGGRF 241 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.7E-36	183	244	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.017	184	244	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-27	186	241	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-23	187	209	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-23	218	241	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAVRVQNFPK KTFDESSVRS LSHLSVSCTP WWSLNEQQIE EPLPHNVSLK VETPSQLYHQ 60 TKHLDLQLPD QELTTVQAIG RTHCEVGAIG ATSSQCDPSE SGPDESCEKD TEGQVKPVFL 120 VNNPNTLFSP SHENYNHSMA WTQYPYANAY FNGMFTPYGP QAIIQAQLGG NAPTRIPLPL 180 DLAEDEPIYV NPKQYHGILR RRQYRAKLEA QNKLVKSRKP YLHESRHRHA LNRVRGSGGR 240 FLSKKTLQQP NDNCTNRTNS RSELESHCSR MAGYGGPNTS CMNISSVSDN DGNLQWLEHG 300 FADISRAGST GDGIRHGASV IP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	185	251	2	68	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465162.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
Refseq	XP_012465163.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBL	A0A0D2VJ23	0.0	A0A0D2VJ23_GOSRA; Uncharacterized protein
STRING	Gorai.013G226200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18096	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	1e-42	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Gorai.013G226200.1
Entrez Gene	105783980

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]