PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G242800.1
Common NameB456_013G242800, LOC105782916
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 246aa    MW: 27806.7 Da    PI: 4.8154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G242800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-1358100754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Gorai.013G242800.1  58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100
                         57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.2451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-1355104No hitNo description
SMARTSM003532.7E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1757115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLAMENIENI GDEYKNYWET KYFLENEEYS WPIDEFSGYY DSSSPDGAAS SVAAKNIVSE  60
RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HDQEGRIQAE ISELESGKLK  120
KNPGFEYDQE LPGLRSKKTK LDNIFDYGGS RACPIEVLEL KVTHMGERTM VVSITCSKKT  180
DTMVRLCEVF ESLKLKIITA NITAVSGKLL KTVFVEADER EKDELKVQIE TAIAALNDPQ  240
SPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1456133980Transcription factor MYC2
5gnj_B3e-1456133980Transcription factor MYC2
5gnj_E3e-1456133980Transcription factor MYC2
5gnj_F3e-1456133980Transcription factor MYC2
5gnj_G3e-1456133980Transcription factor MYC2
5gnj_I3e-1456133980Transcription factor MYC2
5gnj_M3e-1456133980Transcription factor MYC2
5gnj_N3e-1456133980Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463465.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV93e-93BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A0D2SJE40.0A0A0D2SJE4_GOSRA; Uncharacterized protein
STRINGGorai.013G242800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.16e-96bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]