PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G246000.1

Common Name

B456_013G246000, LOC105784029

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 297aa MW: 32839.3 Da PI: 7.3623

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G246000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.8	1.1e-08	37	81	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC C +H+ H +vp+ Gorai.013G246000.1 37 LMCDVCEQAPAAFTCKADAAALCVACDADIHSAnhlarrHYRVPI 81 58****************************955766667777765 PP
2	CCT	65.8	1.2e-22	217	261	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R a++lRY+eKrk+RkFeK++rY+sRKa+AesRpR+KGrFvk+++ Gorai.013G246000.1 217 RVARVLRYREKRKKRKFEKTVRYASRKAYAESRPRIKGRFVKRTQ 261 89****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.2E-14	34	81	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.623	34	81	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.5E-6	37	81	IPR000315	B-box-type zinc finger
CDD	cd00021	8.72E-9	38	81	No hit	No description
PROSITE profile	PS51017	16.38	217	259	IPR010402	CCT domain
Pfam	PF06203	7.7E-17	217	259	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MAAKHCDICK PTATDPDFMC LSYDSSTTVH GGIGRVLMCD VCEQAPAAFT CKADAAALCV 60 ACDADIHSAN HLARRHYRVP IDPFLGPQKE DVVEMGSWSL LPGFNHKLVE TEDLGISEMD 120 PLIDLEYQDG YHVLQHHNLG MESLVPVQIE PATTVPVVNP IHFCQSQSLS HSVPSSSVEL 180 SDGNSVSDIS YPLRGTTVDP SVLICNNQAN QVGTMDRVAR VLRYREKRKK RKFEKTVRYA 240 SRKAYAESRP RIKGRFVKRT QIHNRVDHLC NSAISPSTTT TTTSHTHYYG IVPSFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM201961	0.0	KM201961.1 Gossypium raimondii CONSTANS-like 8 protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465237.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5 isoform X1
TrEMBL	A0A0D2VI52	0.0	A0A0D2VI52_GOSRA; Uncharacterized protein
STRING	Gorai.013G246000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24331	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	6e-30	CONSTANS-like 5

Link Out ? help Back to Top
Phytozome	Gorai.013G246000.1
Entrez Gene	105784029

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]