PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.013G250300.2

Common Name

B456_013G250300, LOC105783547

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

EIL

Protein Properties

Length: 340aa MW: 38163.6 Da PI: 10.2385

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.013G250300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	386.6	3.7e-118	14	280	1	274
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 +el++rmwkd ++l+r+ker++ + +a++ n+++e arrkk+sraQDgiLk Ml mev+na+GfvYgi+pekgk v+gasd+L Gorai.013G250300.2 14 DELERRMWKDSVRLRRIKERERVAA--Q----QAAELNQTSELARRKKISRAQDGILKNMLMLMEVYNARGFVYGIVPEKGKAVSGASDNL 98 79****************99743..3....3456789************************************************ PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS EIN3 92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182 raWWkekv+fd+ngpaai+ky+a++l++s ++++ ++ + +sl++lqD+t+gSLLs+lmqhcdppqr++plek ++pPWWPtG+e+ww Gorai.013G250300.2 99 RAWWKEKVNFDKNGPAAIVKYEAECLAMSVSDRN--RNGNPCSSLQDLQDATIGSLLSTLMQHCDPPQRKYPLEKRIPPPWWPTGNEDWWV 187 ************************988877..6789999******************************************** PP HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXXX CS EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkqs 271 +lgl++ + ppykkphdlkk+wkv+vLtavikhmsp+i++ir++++qsk+lq k +akes+++l vl++ee++++t s+ s+ + +s Gorai.013G250300.2 188 KLGLQRGDS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVLQSKCLQGKLTAKESAIWLGVLGREEALIRTSSMTkiSRGGHADS 277 *9998.9***************************************************************999886544222233 PP XXX CS EIN3 272 pkv 274 ++v Gorai.013G250300.2 278 NDV 280 333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.1E-114	14	258	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.4E-67	137	265	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	2.09E-59	140	261	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MGEEDVSDEE IRADELERRM WKDSVRLRRI KERERVAAQQ AAELNQTSEL ARRKKISRAQ 60 DGILKNMLML MEVYNARGFV YGIVPEKGKA VSGASDNLRA WWKEKVNFDK NGPAAIVKYE 120 AECLAMSVSD RNRNGNPCSS LQDLQDATIG SLLSTLMQHC DPPQRKYPLE KRIPPPWWPT 180 GNEDWWVKLG LQRGDSPPYK KPHDLKKMWK VGVLTAVIKH MSPDIAKIRR HVLQSKCLQG 240 KLTAKESAIW LGVLGREEAL IRTSSMTKIS RGGHADSNDV VGDQIGSVSS KNGGRNQLTD 300 AEPVALIGND DAPLVQEDVP VEKQSRRKRP RLRSSRGGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wij_A	1e-71	141	264	12	135	ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	332	RKRPRLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012464526.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X2
Refseq	XP_012464527.1	0.0	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X2
Swissprot	O23116	1e-142	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A0D2W9C5	0.0	A0A0D2W9C5_GOSRA; Uncharacterized protein
STRING	Gorai.013G250300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	1e-142	ETHYLENE-INSENSITIVE3-like 3

Link Out ? help Back to Top
Phytozome	Gorai.013G250300.2
Entrez Gene	105783547

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]