PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G252600.1
Common NameB456_013G252600, LOC105783153
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 476aa    MW: 52898.8 Da    PI: 6.3294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G252600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.67.6e-140474701374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+ +L+++selaspdgd+mqR+aayfteALa r+++++++l ka+++++   + +se++ +++lf+ev+P+l
  Gorai.013G252600.1  47 LIHLLLTCANHVATGSLENANIALEQISELASPDGDTMQRIAAYFTEALADRILKTWPGLHKAINSTRVV-DLVSEQALVRRLFFEVFPFL 136
                         689*************************************************************999886.679999************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k ++l+ NqaI ea+ege+ vH+iD+d+ +++QW+aL++ L++Rpegpp+lRiTg++     +ke l ++g+rL++ Ae+l++pf+fn+ v
  Gorai.013G252600.1 137 KAAFLLVNQAIIEAMEGEKVVHVIDLDAAEPMQWIALIRGLSARPEGPPHLRITGIHV----RKEVLDQMGHRLSEEAEKLDIPFQFNP-V 222
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..........................................................d 215
                         + +ledl++e+L+vk+gEa+a+++vl+lh+ll                                                          +
  Gorai.013G252600.1 223 VGELEDLDVERLHVKTGEAVAISSVLRLHSLLasddeplrkklplalknsngihlqralqmsqntlgellekdtvngyspspdsasssplS 313
                         999*********************************************************************************7654322 PP

                GRAS 216 esvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                               s    + d++L ++++l Pk+vv++eq+++hn+++++er+le+l+ y+alfd+le++++r+s+er k+E++l+g+ei+n+++ceg
  Gorai.013G252600.1 314 ------SpvspKVDTFLTALRGLLPKLVVITEQDSNHNGSTLMERLLESLHSYAALFDCLESTVSRASSERLKLEKMLFGNEIKNIISCEG 398
                         ......3334468****************************************************************************** PP

                GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         aer+erhe+lekW +rl++aGF +vpls++ + qak+ll+ ++ +gy+++ e+g+++++W+drp++svSaWr
  Gorai.013G252600.1 399 AERKERHEKLEKWIQRLDSAGFCNVPLSYYGMLQAKTLLQGYNCNGYKMKGENGCVMICWQDRPMFSVSAWR 470
                         ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.41721450IPR005202Transcription factor GRAS
PfamPF035142.6E-13747470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSQNESSPLK SSSSSLQVFS MMSLSPSLGS SYPWLKELKS EERGLYLIHL LLTCANHVAT  60
GSLENANIAL EQISELASPD GDTMQRIAAY FTEALADRIL KTWPGLHKAI NSTRVVDLVS  120
EQALVRRLFF EVFPFLKAAF LLVNQAIIEA MEGEKVVHVI DLDAAEPMQW IALIRGLSAR  180
PEGPPHLRIT GIHVRKEVLD QMGHRLSEEA EKLDIPFQFN PVVGELEDLD VERLHVKTGE  240
AVAISSVLRL HSLLASDDEP LRKKLPLALK NSNGIHLQRA LQMSQNTLGE LLEKDTVNGY  300
SPSPDSASSS PLSSPVSPKV DTFLTALRGL LPKLVVITEQ DSNHNGSTLM ERLLESLHSY  360
AALFDCLEST VSRASSERLK LEKMLFGNEI KNIISCEGAE RKERHEKLEK WIQRLDSAGF  420
CNVPLSYYGM LQAKTLLQGY NCNGYKMKGE NGCVMICWQD RPMFSVSAWR CRNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-65354737382Protein SCARECROW
5b3h_A1e-65354736381Protein SCARECROW
5b3h_D1e-65354736381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151531e-168JX615153.1 Gossypium hirsutum clone NBRI_GE58996 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463877.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0D2W9E00.0A0A0D2W9E0_GOSRA; Uncharacterized protein
STRINGGorai.013G252600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]