PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G264200.1
Common NameB456_013G264200, LOC105781980
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 247aa    MW: 26945.9 Da    PI: 8.8629
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G264200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-201574357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+++tkeq+  Le+l+++  r+psa+++++++++l     ++ ++V++WFqN++a++++
  Gorai.013G264200.1 15 SRWNPTKEQISMLESLYKQgIRTPSADQIQQITSRLkaygTIEGKNVFYWFQNHKARQRQ 74
                        7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-371476365
   Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++RW+Pt+eQi +Le+lyk+G+rtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
  Gorai.013G264200.1 14 NSRWNPTKEQISMLESLYKQGIRTPSADQIQQITSRLKAYGTIEGKNVFYWFQNHKARQRQKQ 76
                        68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-131081IPR009057Homeodomain-like
PROSITE profilePS5007110.8351075IPR001356Homeobox domain
SMARTSM003892.7E-61279IPR001356Homeobox domain
PfamPF000464.8E-181574IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-81574IPR009057Homeodomain-like
CDDcd000866.04E-71676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEGGGGGGGG GGGNSRWNPT KEQISMLESL YKQGIRTPSA DQIQQITSRL KAYGTIEGKN  60
VFYWFQNHKA RQRQKQKQEN LAYINRYIHH HHRARPVFHP PPCTNVVCAG PYFVPQADHH  120
HHLGFYPQCP KVLLPSGSIK RKGRPIGKTG KALFYNGNAY DHTMVPSPDT ENLNNGAFNN  180
GGGATNHHET LPLFPLHPTG VSEETLMASS SPTGSTSCET TISAGGVDNH ESSNEGSGEH  240
RFIDFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837212e-71JX583721.1 Gossypium hirsutum clone NBRI_GE16841 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461940.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A0D2SK610.0A0A0D2SK61_GOSRA; Uncharacterized protein
STRINGGorai.013G264200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-59WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]