PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G265200.1
Common NameB456_013G265200, LOC105783294
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 170aa    MW: 18599.7 Da    PI: 8.7171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G265200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000354264123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k+Fs+   L  H  +H
  Gorai.013G265200.1 42 FACKTCDKRFSSFQALGGHRASH 64
                        78**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-124166IPR007087Zinc finger, C2H2
SuperFamilySSF576677.3E-941106No hitNo description
SMARTSM003550.194264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1184269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139126.0E-1084107IPR007087Zinc finger, C2H2
SMARTSM003550.2384106IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.64284106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MKRDREDREI EAMAMANCLM LLSKVGQIDP PKHNSIHQRG VFACKTCDKR FSSFQALGGH  60
RASHKKPRFT DADLPASPKK PKIHECSICG LEFPIGQALG GHMRKHRVVS NEGMVVTRPV  120
TEKLNGDDAD NDGGLCLDLK LAPCGIDLDL KLEKAAAPPR MPPVVHLFI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464123.11e-122PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A0D2U7I51e-120A0A0D2U7I5_GOSRA; Uncharacterized protein
STRINGGorai.013G265200.11e-121(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-33C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]