PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G267200.1
Common NameB456_013G267200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 226aa    MW: 25077.1 Da    PI: 10.3978
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G267200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-17137170134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C +C + +Tp+WR+gp g+ktLCnaCG++yr+ +
  Gorai.013G267200.1 137 CPHCEVMETPQWREGPIGPKTLCNACGVCYRSDR 170
                         9******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-11131181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.7E-13135168IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.554135167IPR000679Zinc finger, GATA-type
CDDcd002022.46E-11136185No hitNo description
SuperFamilySSF577161.85E-13136194No hitNo description
PfamPF003203.4E-14137170IPR000679Zinc finger, GATA-type
PROSITE patternPS003440137162IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
GDFLDDIIVE SLTFSCDGYS QQSSSTKASY SKSTDVKGSS WFQTSSPVSV LDSRSSSSGA  60
NRTPINPNLS FQGKRCRTNR RRASTLNSPF TLPLVFSTFS TSQKPTRKRQ KKKNPKLLSG  120
SSESNNSSSQ QLVIRKCPHC EVMETPQWRE GPIGPKTLCN ACGVCYRSDR LFPEYRPAGS  180
PTFIPSLHSN SHKVVEMRRK SQFAGDSNNI RVVNPTETSL RYQLY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461702.11e-163PREDICTED: GATA transcription factor 11-like
TrEMBLA0A0D2U7M01e-164A0A0D2U7M0_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.013G267200.11e-164(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-36GATA transcription factor 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]