PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G268300.1
Common NameB456_013G268300, LOC105783170
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 695aa    MW: 79339.3 Da    PI: 9.1894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G268300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07485526145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE e  ++ v+q+G + W++   t+g  + + ++k+ w+
  Gorai.013G268300.1 485 KRPWTPEEYEMVKKFVEQHGRN-WRLLGDTLG--KHRHHVKDTWR 526
                         569*****************66.********9..67888998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-5411482IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-5414501IPR009057Homeodomain-like
PROSITE profilePS500907.12480529IPR017877Myb-like domain
SMARTSM007171.2484531IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-6485540IPR009057Homeodomain-like
PfamPF139212.0E-10488545No hitNo description
Gene3DG3DSA:1.10.10.609.1E-9502537IPR009057Homeodomain-like
PROSITE profilePS500906.632531597IPR017877Myb-like domain
SMARTSM007174533599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-6538598IPR009057Homeodomain-like
PROSITE profilePS500907.259599652IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MGKKMREKDG HKSENKQTEE VNSIEKEIDV LNGVPKSSNR DDDNNKIKDR TKKRKTEFDT  60
DKKESQNTHK KHKTSKDAVE EIPMETCLGG KENAEQESSK AMNLENNGEA KRVKKDKHKK  120
NRDEINAVAT VTETLKHSKK ESKKAHKKHK KSKDEVKEIS MESCKGGKKN TEQESSKVMN  180
LENNGEAKRV GKDKHKDKDG TNAVGTVTGT LEHSKKESPK AHKKSKDVVE EISMETCLGG  240
KENAEKESSK VVNLGNNGEA EKVREDKHKR KNKDGIDAVA TVTETFVHSK MQEPVETEVC  300
EKQKKKKKLE KVNGNVADDI AAMSSTTDKK GTGKKNSAGN ELERKKLRDI GGDDEAGNKR  360
KKKKSKSVEN DTDQVENATL KEKSKKVSFS DQVEVFPSMD DAKKDKEGFV KGKRFSKEED  420
EIVMNAVADY IESHNLGDEG LNMVLNCGSH KEVRRCWNEI QAAIPWRPVE SVYNRAHVLF  480
ERDEKRPWTP EEYEMVKKFV EQHGRNWRLL GDTLGKHRHH VKDTWRRISA NAKKGQWSQD  540
EYQKLFDLVN LDLCMKATQE RKSKYGMLRD NICWTAIGNK METRAFVSCC SKWYRNLTSP  600
MVAEGLWADV DDYRMLDALS SLDACCMEDV NWDNILEHRS GDLCRKRWSQ MVQRLGSNKN  660
LSFAEQVDIL AERYRPDMIE ARETFDSKQP VDLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343363RKKLRDIGGDDEAGNKRKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463907.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A0D2VJ200.0A0A0D2VJ20_GOSRA; Uncharacterized protein
STRINGGorai.013G268300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-122MYB_related family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]