PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.N013300.1
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 358aa    MW: 40917 Da    PI: 4.571
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.N013300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36151072103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Flkk ye+++de+++ +isws+n++sf+++d++ef+ ++Lpk+Fkhsnf+SF+RQLn+YgF+k+++++         weF+++ F +g+k+ll+
  Gorai.N013300.1  15 FLKKCYEMVDDESTDAIISWSQNNDSFIIWDMTEFSVHLLPKFFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQKDLLK 99 
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+k++
  Gorai.N013300.1 100 NIARRKHS 107
                      *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.3E-37599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5511104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-3411104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVKPSENGSQ SIAPFLKKCY EMVDDESTDA IISWSQNNDS FIIWDMTEFS VHLLPKFFKH  60
SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKHSPGS EQRKPLQQQP  120
LQQLENTVGS CENNENTALW KEVENLKTDK NALMQELVKL TQFQETADNK VLLLKERLQG  180
MEKSQQQLLS FLIMAMQSPG FLVQLIQPKE NNWRMAEPSN MLEQVTEDGE PIASDNMIVR  240
YQPPVDGTSK PVLAPVVDCE NPHESDNSSD GTKDFWMNID FVKVLMDESH TPFIPPDLHD  300
DGAWEKLLLG NTFLENNDDG NQDKEIPMNS EKSPDLELLT DQMGHLTSKS TKPHQTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-25210416129Heat shock factor protein 1
5d5v_B4e-25210416129Heat shock factor protein 1
5d5v_D4e-25210416129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.210.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487483800.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674210.0KR067421.1 Gossypium hirsutum HSF40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466202.10.0PREDICTED: heat stress transcription factor A-8-like, partial
RefseqXP_017619515.10.0PREDICTED: heat stress transcription factor A-8-like
RefseqXP_017619516.10.0PREDICTED: heat stress transcription factor A-8-like
SwissprotQ9S7U51e-108HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0D2U8U00.0A0A0D2U8U0_GOSRA; Uncharacterized protein (Fragment)
TrEMBLA0A2P5VQA70.0A0A2P5VQA7_GOSBA; Uncharacterized protein
STRINGGorai.N013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-111heat shock transcription factor A8