PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.N015500.1

Common Name

B456_N015500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 83aa MW: 9270.5 Da PI: 4.5069

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.N015500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	29.9	7e-10	13	66	3	55
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmq.RlaayfteALaarlar 55 +lLl+cAea+++gdl++a+a+L ++ la ++ d+ q R+++yf+ AL +r ++ Gorai.N015500.1 13 RLLLSCAEAIEDGDLKRADAFLHNILILADERPDSYQsRVVKYFADALVRRAYG 66 79************************9999987655***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	9.046	1	82	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-7	13	66	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MDSYLFDTET ALRLLLSCAE AIEDGDLKRA DAFLHNILIL ADERPDSYQS RVVKYFADAL 60 VRRAYGLHPA SSYFTFLVDP AP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583793	3e-43	JX583793.1 Gossypium hirsutum clone NBRI_GE16930 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016714046.1	5e-39	PREDICTED: uncharacterized protein LOC107927488 isoform X1
Refseq	XP_016714047.1	5e-39	PREDICTED: uncharacterized protein LOC107927488 isoform X2
TrEMBL	A0A0D2SLY9	6e-52	A0A0D2SLY9_GOSRA; Uncharacterized protein
STRING	Gorai.N015500.1	9e-53	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8809	4	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	5e-10	RGA-like 1

Link Out ? help Back to Top
Phytozome	Gorai.N015500.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]